Merge branch 'JCSDA:develop' into develop

Author: rickgrubin-tomorrow

.github/workflows/macos-ci-aarch64.yaml

@@ -211,8 +211,8 @@ jobs:
 
           module use ${ENVDIR}/install/modulefiles/Core
           module load stack-apple-clang/14.0.3
-          module load stack-openmpi/5.0.5
-          module load stack-python/3.11.7
+          module load stack-openmpi/5.0.6
+          module load stack-python/3.11.11
           module available
 
           module load jedi-ufs-env

.github/workflows/ubuntu-ci-x86_64-gnu.yaml

@@ -218,8 +218,8 @@ jobs:
 
           module use ${ENVDIR}/install/modulefiles/Core
           module load stack-gcc/11.4.0
-          module load stack-openmpi/5.0.5
-          module load stack-python/3.11.7
+          module load stack-openmpi/5.0.6
+          module load stack-python/3.11.11
           module available
 
           module load jedi-ufs-env

.github/workflows/ubuntu-ci-x86_64-intel.yaml

@@ -240,7 +240,7 @@ jobs:
           module use ${ENVDIR}/install/modulefiles/Core
           module load stack-oneapi/2024.2.0
           module load stack-intel-oneapi-mpi/2021.13
-          module load stack-python/3.11.7
+          module load stack-python/3.11.11
           module available
 
           module load jedi-ufs-env

.github/workflows/ubuntu-ci-x86_64-oneapi-ifx.yaml

@@ -240,7 +240,7 @@ jobs:
           module use ${ENVDIR}/install/modulefiles/Core
           module load stack-oneapi/2024.2.0
           module load stack-intel-oneapi-mpi/2021.13
-          module load stack-python/3.11.7
+          module load stack-python/3.11.11
           module available
 
           module load jedi-ufs-env

.github/workflows/ubuntu-ci-x86_64-oneapi.yaml

@@ -6,11 +6,11 @@ on:
 
 jobs:
   test:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-latest
 
     steps:
       - name: checkout
-        uses: actions/checkout@v2
+        uses: actions/checkout@v4
         with:
           submodules: true
 

.github/workflows/unit-tests.yaml

@@ -12,7 +12,7 @@ jobs:
         os: [ubuntu-latest, macos-latest]
     steps:
       - name: checkout
-        uses: actions/checkout@v2
+        uses: actions/checkout@v4
         with:
           submodules: true
 

.github/workflows/util-tests.yaml

@@ -28,3 +28,6 @@ config:
 
   # Timeout in seconds for web requests (curl/urllib)
   connect_timeout: 60
+
+  # Install deprecated packages (need for py-werkzeug@0.15.3, DH 20250417)
+  deprecated: true

configs/common/config.yaml

@@ -5,10 +5,6 @@ modules:
     roots:
       tcl: $env/install/modulefiles
     tcl:
-      # Core compiler is a dummy that is not used to build the stack, do not change.
-      # Hopefully nobody is trying to build software with gcc-4.6 in 2023 ...
-      core_compilers::
-      - gcc@4.6
       projections:
         all: '{compiler.name}/{compiler.version}/{name}/{version}'
         ^mpi: '{^mpi.name}/{^mpi.version}/{compiler.name}/{compiler.version}/{name}/{version}'

configs/common/modules_tcl.yaml

@@ -120,6 +120,11 @@ packages:
     # Note: Uncommenting this entry will break
     # the container builds.
     #require: '@2.11.0'
+  # https://github.com/spack/spack/issues/49358
+  # https://github.com/spack/spack/pull/44323
+  glib:
+    require:
+    - '@:2.78.3'
   # To avoid duplicate packages being built
   gmake:
     require:
@@ -221,7 +226,7 @@ packages:
   # with Intel in py-cryptography unless external curl and openssl
   # are removed, which itself is problematic.
   python:
-    require: '@3.11.7 ~crypt'
+    require: '@3.11.11 ~crypt'
   py-cartopy:
     require: '+plotting'
   # Avoid full rust dependency: version 43+ requires py-maturin