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revert help links from beta to main
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‎templates/summary_validation_pdf.html

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@@ -84,13 +84,13 @@ <h3 class="center">Summary of integrative structure determination of {{complex_n
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<td></td>
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</tr>
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<tr>
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#sumtabentry">Entry composition</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#sumtabentry">Entry composition</a></i></td>
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<td>
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{{ write_bullet(summary_entities) }}
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</td>
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</tr>
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<tr>
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#sumtabdata">Datasets used for modeling</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#sumtabdata">Datasets used for modeling</a></i></td>
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<td>
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{% for dataset_ in Datasets_list[1:] %}
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{% if dataset_[2] == dataset_[3] == "Not available" %}
@@ -107,24 +107,24 @@ <h3 class="center">Summary of integrative structure determination of {{complex_n
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<td></td>
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</tr>
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<tr>
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#sumtabnumrepr">Number of representations</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#sumtabnumrepr">Number of representations</a></i></td>
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<td>
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{{ rep_info|length }}
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</td>
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</tr>
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<tr>
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#sumtabscale">Scale</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#sumtabscale">Scale</a></i></td>
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<td>
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{{ write_bullet(summary_scale) }}
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</td>
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</tr>
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<tr>
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#sumtabrigidflex">Number of rigid and flexible segments</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#sumtabrigidflex">Number of rigid and flexible segments</a></i></td>
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<td>{{ write_bullet(summary_segments) }}</td>
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</tr>
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<!--
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<tr>
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#sumtabatom">Structural coverage (rigid segments)</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#sumtabatom">Structural coverage (rigid segments)</a></i></td>
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<td>{{ struc }}</td>
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</tr>
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-->
@@ -133,14 +133,14 @@ <h3 class="center">Summary of integrative structure determination of {{complex_n
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<td></td>
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</tr>
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<tr>
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#sumtabresphys">Physical principles</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#sumtabresphys">Physical principles</a></i></td>
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<td>
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{{ write_bullet(physics) }}
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</td>
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</tr>
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<tr>
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<tr>
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#sumtabresexp">Experimental data</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#sumtabresexp">Experimental data</a></i></td>
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<td>
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{% for i in range(restraint_info|length) %}
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- {{ restraint_info[i][0] }} <br>
@@ -154,7 +154,7 @@ <h3 class="center">Summary of integrative structure determination of {{complex_n
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</tr>
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{% if sampling_validation is not none %}
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#sumtabval">Sampling validation</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#sumtabval">Sampling validation</a></i></td>
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<td>
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{{ write_bullet(sampling_validation) }}
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</td>
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<!--
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{% if clustering is not none %}
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<tr>
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<td><i> <a href="https://beta.pdb-ihm.org/validation_help.html#sumtabclus1">Clustering algorithm</a> ,<a href="https://beta.pdb-ihm.org/validation_help.html#sumtabclus2">clustering feature</a></i></td>
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<td><i> <a href="https://pdb-ihm.org/validation_help.html#sumtabclus1">Clustering algorithm</a> ,<a href="https://pdb-ihm.org/validation_help.html#sumtabclus2">clustering feature</a></i></td>
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<td>{{clustering}}, {{feature}}</td>
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</tr>
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{% endif %}
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-->
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<tr>
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#sumtabnum1">Number of ensembles</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#sumtabnum1">Number of ensembles</a></i></td>
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<td>{{ num_ensembles }}</td>
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</tr>
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<tr>
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#sumtabnum2">Number of models in ensembles</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#sumtabnum2">Number of models in ensembles</a></i></td>
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<td>{{ models }}</td>
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</tr>
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<tr>
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#sumtabnum3">Number of deposited models</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#sumtabnum3">Number of deposited models</a></i></td>
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<td>{{ number_of_models }}</td>
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</tr>
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<tr>
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<td><i> <a href="https://beta.pdb-ihm.org/validation_help.html#sumtabprec">Model precision (uncertainty of models)</a></i></td>
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<td><i> <a href="https://pdb-ihm.org/validation_help.html#sumtabprec">Model precision (uncertainty of models)</a></i></td>
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<td>{{ write_bullet(model_precision) }}</td>
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</tr>
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<tr>
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#sumtabdq">Data quality</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#sumtabdq">Data quality</a></i></td>
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<td>
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{{ write_bullet(Data_quality) }}
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</td>
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</tr>
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{% if disclaimer > 0 %}
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#sumtabmq">Model quality</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#sumtabmq">Model quality</a></i></td>
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<td>
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Based on existing standards, there are no model quality assessments for this entry.
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{% else %}
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{% if assess_atomic_segments is not none %}
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#molprobity">Model quality: assessment of atomic segments</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#molprobity">Model quality: assessment of atomic segments</a></i></td>
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<td>
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{{ write_bullet(assess_atomic_segments) }}
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</td>
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</tr>
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{% endif %}
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{% if assess_excluded_volume is not none %}
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#exv">Model quality: assessment of excluded volume</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#exv">Model quality: assessment of excluded volume</a></i></td>
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<td>
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{{ assess_excluded_volume }}
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</td>
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</tr>
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{% endif %}
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{% endif %}
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#sumtabfit1">Fit to data used for modeling</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#sumtabfit1">Fit to data used for modeling</a></i></td>
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<td>
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{{ write_bullet(validation_input) }}
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</td>
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</tr>
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#sumtabfit2">Fit to data used for validation</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#sumtabfit2">Fit to data used for validation</a></i></td>
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{{ write_bullet(cross_validation) }}
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</td>
@@ -235,36 +235,36 @@ <h3 class="center">Summary of integrative structure determination of {{complex_n
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</tr>
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{% for i in range(method_info['Step number']|length) %}
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<td><i>{{ i + 1 }}. <a href="https://beta.pdb-ihm.org/validation_help.html#sumtabmetname">Method name</a></i></td>
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<td><i>{{ i + 1 }}. <a href="https://pdb-ihm.org/validation_help.html#sumtabmetname">Method name</a></i></td>
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<td>{{ format_value(method_info['Method name'][i]) }}</td>
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</tr>
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{% if not ((method_info['Method type'][i] is none) or (method_info['Method type'][i] == "None")) %}
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<td><i> &nbsp; &nbsp; &nbsp; <a href="https://beta.pdb-ihm.org/validation_help.html#sumtabmetmet">Method type</a></i></td>
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<td><i> &nbsp; &nbsp; &nbsp; <a href="https://pdb-ihm.org/validation_help.html#sumtabmetmet">Method type</a></i></td>
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<td>
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{{ method_info['Method type'][i] }}
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</td>
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</tr>
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{% endif %}
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{% if not ((method_info['Method description'][i] is none) or (method_info['Method description'][i] == "None")) %}
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<td><i> &nbsp; &nbsp; &nbsp; <a href="https://beta.pdb-ihm.org/validation_help.html#sumtabmetdesc">Method description</a></i></td>
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<td><i> &nbsp; &nbsp; &nbsp; <a href="https://pdb-ihm.org/validation_help.html#sumtabmetdesc">Method description</a></i></td>
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<td>
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{{ method_info['Method description'][i] }}
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</td>
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</tr>
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{% endif %}
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{% if not ((method_info['Number of computed models'][i] is none) or (method_info['Number of computed models'][i] == "None")) %}
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<td><i> &nbsp; &nbsp; &nbsp; <a href="https://beta.pdb-ihm.org/validation_help.html#sumtabmetnummodels">Number of computed models</a></i></td>
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<td><i> &nbsp; &nbsp; &nbsp; <a href="https://pdb-ihm.org/validation_help.html#sumtabmetnummodels">Number of computed models</a></i></td>
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<td>
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{{ method_info['Number of computed models'][i] }}
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</td>
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</tr>
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{% endif %}
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{% endfor %}
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<td><i><a href="https://beta.pdb-ihm.org/validation_help.html#sumtabsoft">Software</a></i></td>
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<td><i><a href="https://pdb-ihm.org/validation_help.html#sumtabsoft">Software</a></i></td>
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<td>
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{{ write_bullet(software) }}
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</td>

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