Merge branch 'imp_module'

With this merge the repository should work
as an IMP module.

Author: benmwebb

.github/workflows/build.yml

@@ -0,0 +1,28 @@
+name: build
+
+on:
+  push:
+  pull_request:
+  schedule:
+  - cron: "31 2 * * 4"  # Run at a random time weekly
+
+jobs:
+  build:
+
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest]
+        python-version: ["3.13"]
+    runs-on: ${{ matrix.os }}
+
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        submodules: true
+    - name: Setup dependencies
+      run: |
+        pip3 install coverage pytest-flake8
+    - name: Test
+      run: |
+        flake8 .

.gitignore

@@ -1,3 +1,20 @@
-.scons
+*.os
+*.o
 *.pyc
-.DS_Store
+*~
+*.old
+*.orig
+*.gcno
+*.gcda
+test/CMakeLists.txt
+src/CMakeLists.txt
+ModuleBuild.cmake
+CMakeModules/
+benchmark/CMakeLists.txt
+bin/CMakeLists.txt
+dependency/CMakeLists.txt
+examples/CMakeLists.txt
+pyext/CMakeLists.txt
+utility/CMakeLists.txt
+*/Files.cmake
+*/*/Files.cmake

.imp_info.py

@@ -0,0 +1,3 @@
+{
+    "name": "IMP.emseqfinder"
+}

CMakeLists.txt

@@ -0,0 +1,35 @@
+# Are we running cmake from this directory (out of tree build) ?
+if(CMAKE_SOURCE_DIR STREQUAL CMAKE_CURRENT_SOURCE_DIR)
+  cmake_minimum_required(VERSION 2.8.12...3.6.0)
+  project(imp_module)
+
+  if(POLICY CMP0058)
+    cmake_policy(SET CMP0058 NEW)
+  endif(POLICY CMP0058)
+
+  if(POLICY CMP0053)
+    cmake_policy(SET CMP0053 NEW)
+  endif(POLICY CMP0053)
+
+  set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${PROJECT_SOURCE_DIR}/cmake_modules)
+
+  set(SWIG_EXECUTABLE swig CACHE STRING "SWIG program")
+
+  find_package(IMP REQUIRED)
+  include(${IMP_USE_FILE})
+
+  enable_testing()
+
+  set(LIBRARY_OUTPUT_PATH ${CMAKE_BINARY_DIR}/lib)
+
+  # Don't set MACOSX_RPATH by default
+  set(CMAKE_MACOSX_RPATH 0)
+
+  include_directories(SYSTEM ${IMP_INCLUDE_DIR})
+  include_directories("${CMAKE_BINARY_DIR}/include")
+
+  imp_build_module(${CMAKE_SOURCE_DIR} emseqfinder)
+
+else()
+  include(ModuleBuild.cmake)
+endif()