@@ -46,7 +46,7 @@ def test_c2st_fmpe_on_linearGaussian(num_dim: int, prior_str: str):
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x_o = zeros (1 , num_dim )
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num_samples = 1000
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- num_simulations = 2500
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+ num_simulations = 4000
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# likelihood_mean will be likelihood_shift+theta
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likelihood_shift = - 1.0 * ones (num_dim )
@@ -73,14 +73,10 @@ def test_c2st_fmpe_on_linearGaussian(num_dim: int, prior_str: str):
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theta = prior .sample ((num_simulations ,))
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x = linear_gaussian (theta , likelihood_shift , likelihood_cov )
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- inference = FMPE (prior , show_progress_bars = False )
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+ inference = FMPE (prior , show_progress_bars = True )
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- posterior_estimator = inference .append_simulations (theta , x ).train (
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- training_batch_size = 100
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- )
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- posterior = DirectPosterior (
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- prior = prior , posterior_estimator = posterior_estimator
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- ).set_default_x (x_o )
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+ inference .append_simulations (theta , x ).train (training_batch_size = 100 )
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+ posterior = inference .build_posterior ().set_default_x (x_o )
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samples = posterior .sample ((num_samples ,))
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# Compute the c2st and assert it is near chance level of 0.5.
@@ -104,6 +100,13 @@ def test_c2st_fmpe_on_linearGaussian(num_dim: int, prior_str: str):
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dkl < max_dkl
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), f"D-KL={ dkl } is more than 2 stds above the average performance."
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+ # test probs
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+ probs = posterior .log_prob (samples ).exp ()
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+ gt_probs = gt_posterior .log_prob (samples ).exp ()
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+ assert torch .allclose (
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+ probs , gt_probs , atol = 0.2
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+ ) # note that this is 0.1 for NPE.
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+
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elif prior_str == "uniform" :
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# Check whether the returned probability outside of the support is zero.
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posterior_prob = get_prob_outside_uniform_prior (posterior , prior , num_dim )
@@ -161,12 +164,8 @@ def test_fmpe_with_different_models(model):
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inference = FMPE (prior , density_estimator = estimator_build_fun )
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- posterior_estimator = inference .append_simulations (theta , x ).train (
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- training_batch_size = 100
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- )
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- posterior = DirectPosterior (
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- prior = prior , posterior_estimator = posterior_estimator
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- ).set_default_x (x_o )
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+ inference .append_simulations (theta , x ).train (training_batch_size = 100 )
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+ posterior = inference .build_posterior ().set_default_x (x_o )
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samples = posterior .sample ((num_samples ,))
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# Compute the c2st and assert it is near chance level of 0.5.
@@ -349,17 +348,12 @@ def simulator(theta):
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@pytest .mark .slow
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- @pytest .mark .xfail (
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- reason = "FMPE MAP failing in spite of accuracte c2st." ,
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- strict = True ,
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- raises = AssertionError ,
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- )
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def test_fmpe_map ():
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"""Test whether fmpe can find the MAP of a simple linear Gaussian example."""
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num_dim = 3
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x_o = zeros (1 , num_dim )
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- num_simulations = 2000
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+ num_simulations = 5000
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likelihood_shift = - 1.0 * ones (num_dim )
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likelihood_cov = 0.3 * eye (num_dim )
@@ -374,19 +368,17 @@ def test_fmpe_map():
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theta = prior .sample ((num_simulations ,))
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x = linear_gaussian (theta , likelihood_shift , likelihood_cov )
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- inference = FMPE (prior , show_progress_bars = False )
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+ inference = FMPE (prior , show_progress_bars = True )
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- posterior_estimator = inference .append_simulations (theta , x ).train (
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- training_batch_size = 100
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- )
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- posterior = DirectPosterior (
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- prior = prior , posterior_estimator = posterior_estimator
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- ).set_default_x (x_o )
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+ inference .append_simulations (theta , x ).train (training_batch_size = 100 )
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+ posterior = inference .build_posterior ().set_default_x (x_o )
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- map_ = posterior .map (num_init_samples = 1_000 , show_progress_bars = True )
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+ map_ = posterior .map (show_progress_bars = True , num_iter = 20 )
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# Check whether the MAP is close to the ground truth.
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- assert torch .allclose (map_ , gt_posterior .mean , atol = 0.1 )
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+ assert torch .allclose (
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+ map_ , gt_posterior .mean , atol = 0.2
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+ ), f"{ map_ } != { gt_posterior .mean } "
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def test_multi_round_handling_fmpe ():
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