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fix paths #1641

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Merged
merged 2 commits into from
Aug 15, 2025
Merged

fix paths #1641

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2d433ad
fix paths
manuelgloeckler Aug 15, 2025
ef35cd8
increase tutorial notebook test timeout
janfb Aug 15, 2025
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4 changes: 2 additions & 2 deletions README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -164,13 +164,13 @@ how to run each of these methods
and hassle-free simulation-based inference_](https://arxiv.org/abs/2210.04815)
(NeurIPS 2022).

- [`FMPE`](https://sbi-dev.github.io/sbi/latest/reference/#sbi.inference.trainers.fmpe.fmpe.FMPE)
- [`FMPE`](https://sbi-dev.github.io/sbi/latest/reference/#sbi.inference.trainers.vfpe.fmpe.FMPE)
from Wildberger, J., Dax, M., Buchholz, S., Green, S., Macke, J. H., & Schölkopf, B.
[_Flow matching for scalable simulation-based
inference_](https://proceedings.neurips.cc/paper_files/paper/2023/hash/3663ae53ec078860bb0b9c6606e092a0-Abstract-Conference.html).
(NeurIPS 2023).

- [`NPSE`](https://sbi-dev.github.io/sbi/latest/reference/#sbi.inference.trainers.npse.npse.NPSE) from
- [`NPSE`](https://sbi-dev.github.io/sbi/latest/reference/#sbi.inference.trainers.vfpe.npse.NPSE) from
Geffner, T., Papamakarios, G., & Mnih, A. [_Compositional score modeling for
simulation-based inference_](https://proceedings.mlr.press/v202/geffner23a.html).
(ICML 2023)
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4 changes: 2 additions & 2 deletions mkdocs/docs/reference/inference.md
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Expand Up @@ -17,12 +17,12 @@
filters: [ "!^_", "^__", "!^__class__" ]
inherited_members: true

::: sbi.inference.trainers.fmpe.fmpe.FMPE
::: sbi.inference.trainers.vfpe.fmpe.FMPE
selection:
filters: [ "!^_", "^__", "!^__class__" ]
inherited_members: true

::: sbi.inference.trainers.npse.npse.NPSE
::: sbi.inference.trainers.vfpe.npse.NPSE
selection:
filters: [ "!^_", "^__", "!^__class__" ]
inherited_members: true
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4 changes: 3 additions & 1 deletion tests/tutorials_test.py
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Expand Up @@ -8,6 +8,8 @@
from nbclient.exceptions import CellExecutionError
from nbconvert.preprocessors import ExecutePreprocessor

TEST_TIMEOUT = 1200


def list_notebooks(directory: str) -> list:
"""Return sorted list of all notebooks in a directory."""
Expand All @@ -25,7 +27,7 @@ def test_tutorials(notebook_path):
"""Test that all notebooks in the tutorials directory can be executed."""
with open(notebook_path) as f:
nb = nbformat.read(f, as_version=4)
ep = ExecutePreprocessor(timeout=600, kernel_name='python3')
ep = ExecutePreprocessor(timeout=TEST_TIMEOUT, kernel_name='python3')
print(f"Executing notebook {notebook_path}")
try:
ep.preprocess(nb, {'metadata': {'path': os.path.dirname(notebook_path)}})
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