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Pull develop into branch#478

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luciansmith merged 224 commits intoonly-call-loadPlugins-oncefrom
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Mar 11, 2026
Merged

Pull develop into branch#478
luciansmith merged 224 commits intoonly-call-loadPlugins-oncefrom
development

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Build on push not working; I think it was fixed in develop.

skeating and others added 30 commits August 26, 2024 12:51
there are some untested things in here
…rously' into sk/test-rate-rule-converter-rigorously
 - only run build if repo is ours
fbergmann and others added 29 commits December 8, 2025 10:18
#455: ensure we dont crash on no children
The rate rule converter previously treated the absence of rate
rules as an error, causing conversion to fail. This change
corrects this behavior by downgrading the error to a warning and
allowing the conversion to proceed successfully. This ensures
that models without rate rules are handled gracefully.
Adds a check to prevent rate rule conversion when species from different compartments appear in the same rate rule.

This change ensures that the converter correctly handles models with multiple compartments and avoids generating invalid or unexpected results.

Also, adds example models for testing.
particularly useful given that std::list it does not exist in older versions
Adds derivative functions for trigonometric and hyperbolic
functions, including their inverses.  This completes the
implementation of the derivative function for ASTNodes.
Bump version in preparation of new release
Allow to bypass suitability tests in raterule connverter
current release updated to list 5.21
#438: mark writeMathMLWithNamespaceToString as newobject
Also, set the parent correctly when adding one to an existing element.
The check_library_exists function breaks my build when building both zlib and libsbml at once.  I get the error:

CMake Error at C:/Users/Lucian/Desktop/libroadrunner-deps-backup/build-debug/CMakeFiles/CMakeScratch/TryCompile-m25yy5/CMakeLists.txt:28 (target_link_libraries):
  Error evaluating generator expression:

    $<TARGET_LINKER_FILE:zlibstatic>

  No target "zlibstatic"

If I then hit compile again, it works!  But the first time, it fails, and it needs to work the first time for my github action.

This problem was obfuscated by it previously trying to assign the result to LIBZ_CMAKE_PATH, which already existed, so it... broke the check?  Maybe?  Anyway.

I don't think we need to check that the library exists anyway.  We don't do it for any of the XML libraries, and only do it for BZip.  Which would probably also break my build, but I'm not including bzip in my build at all.
By default no test for symbols from the library will be made, but if `ZLIB_CHECK_FOR_SYMBOLS` is defined the library will be checked.
Allow a model history parent to be set.
@luciansmith luciansmith merged commit 0d5f604 into only-call-loadPlugins-once Mar 11, 2026
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4 participants