Merge pull request #145 from scverse/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

Author: LucaMarconato

.pre-commit-config.yaml

@@ -7,13 +7,13 @@ default_stages:
 minimum_pre_commit_version: 2.16.0
 repos:
     - repo: https://github.com/astral-sh/ruff-pre-commit
-      rev: v0.11.11
+      rev: v0.14.1
       hooks:
           - id: ruff
             args: [--fix, --exit-non-zero-on-fix, --unsafe-fixes]
           - id: ruff-format
     - repo: https://github.com/pre-commit/pre-commit-hooks
-      rev: v5.0.0
+      rev: v6.0.0
       hooks:
           - id: detect-private-key
           - id: check-ast

notebooks/developers_resources/storage_format/_latest_run_notebook.ipynb

@@ -929,4 +929,4 @@
  },
  "nbformat": 4,
  "nbformat_minor": 5
-}
+}

notebooks/examples/speed_up_illustration.ipynb

@@ -363,7 +363,7 @@
    ],
    "source": [
     "%%time\n",
-    "fig, axs = plt.subplots(ncols=2, figsize=(2jjjj, 2))\n",
+    "fig, axs = plt.subplots(ncols=2, figsize=(2, 2))\n",
     "sdata.pl.render_images(\"CytAssist_FFPE_Human_Breast_Cancer_hires_image\").pl.show(ax=axs.tolist(), fig=fig)"
    ]
   },
@@ -525,7 +525,9 @@
    ],
    "source": [
     "%%time\n",
-    "sdata.pl.render_images(\"CytAssist_FFPE_Human_Breast_Cancer_full_image\").pl.show(\"CytAssist_FFPE_Human_Breast_Cancer\", figsize=(15.0, 15.0))\n",
+    "sdata.pl.render_images(\"CytAssist_FFPE_Human_Breast_Cancer_full_image\").pl.show(\n",
+    "    \"CytAssist_FFPE_Human_Breast_Cancer\", figsize=(15.0, 15.0)\n",
+    ")\n",
     "# \"scale3\" is automatically selected and the image is automatically rasterized before rendering"
    ]
   },
@@ -571,7 +573,9 @@
    ],
    "source": [
     "%%time\n",
-    "sdata.pl.render_images(\"CytAssist_FFPE_Human_Breast_Cancer_full_image\", scale=\"scale3\").pl.show(\"CytAssist_FFPE_Human_Breast_Cancer\")"
+    "sdata.pl.render_images(\"CytAssist_FFPE_Human_Breast_Cancer_full_image\", scale=\"scale3\").pl.show(\n",
+    "    \"CytAssist_FFPE_Human_Breast_Cancer\"\n",
+    ")"
    ]
   },
   {
@@ -601,7 +605,9 @@
    ],
    "source": [
     "%%time\n",
-    "sdata.pl.render_images(\"CytAssist_FFPE_Human_Breast_Cancer_full_image\", scale=\"scale3\").pl.show(\"CytAssist_FFPE_Human_Breast_Cancer\", dpi=100)\n",
+    "sdata.pl.render_images(\"CytAssist_FFPE_Human_Breast_Cancer_full_image\", scale=\"scale3\").pl.show(\n",
+    "    \"CytAssist_FFPE_Human_Breast_Cancer\", dpi=100\n",
+    ")\n",
     "# the image is automatically rasterized before rendering"
    ]
   },
@@ -619,7 +625,10 @@
    "outputs": [],
    "source": [
     "sdata_cropped = sdata.query.bounding_box(\n",
-    "    min_coordinate=[0, 0], max_coordinate=[10000, 10000], axes=(\"x\", \"y\"), target_coordinate_system=\"CytAssist_FFPE_Human_Breast_Cancer\"\n",
+    "    min_coordinate=[0, 0],\n",
+    "    max_coordinate=[10000, 10000],\n",
+    "    axes=(\"x\", \"y\"),\n",
+    "    target_coordinate_system=\"CytAssist_FFPE_Human_Breast_Cancer\",\n",
     ")"
    ]
   },
@@ -702,7 +711,9 @@
    ],
    "source": [
     "%%time\n",
-    "sdata_cropped.pl.render_images(\"CytAssist_FFPE_Human_Breast_Cancer_full_image\", scale=\"scale0\").pl.show(\"CytAssist_FFPE_Human_Breast_Cancer\")\n",
+    "sdata_cropped.pl.render_images(\"CytAssist_FFPE_Human_Breast_Cancer_full_image\", scale=\"scale0\").pl.show(\n",
+    "    \"CytAssist_FFPE_Human_Breast_Cancer\"\n",
+    ")\n",
     "# using the highest resolution"
    ]
   },