fix(pyrogue): core PyRogue (_*.py) and memory layer audit fixes + repros

[ruck314]

Summary

Slice of #1196 (general-bug-audit-clean) containing the pyrogue-core subset of the bug-audit fixes — split out so the diff is small enough to review in one sitting.

#1196 will be closed once all slices are open. The original branch retains the per-bug atomic commit history; this PR squashes the file-state for the listed paths.

Files in this slice

• docs/src/installing/build.rst
• python/pyrogue/_Block.py
• python/pyrogue/_DataReceiver.py
• python/pyrogue/_Device.py
• python/pyrogue/_HelperFunctions.py
• python/pyrogue/_Logging.py
• python/pyrogue/_Node.py
• python/pyrogue/_PollQueue.py
• python/pyrogue/_Root.py
• python/pyrogue/_Variable.py
• python/pyrogue/__init__.py
• python/pyrogue/__main__.py
• src/rogue/interfaces/memory/Block.cpp
• src/rogue/interfaces/memory/Emulate.cpp
• src/rogue/interfaces/memory/Variable.cpp
• tests/core/test_block_setpyfunc_release_audit_repro.py
• tests/core/test_core_block_numpy_array_equal_audit_repro.py
• tests/core/test_core_node_eval_audit_repro.py
• tests/core/test_core_poll_queue_shutdown_audit_repro.py
• tests/core/test_core_root_audit_repros.py
• tests/core/test_core_variable_setdict_eval_audit_repro.py
• tests/core/test_datareceiver_mutable_default_audit_repro.py
• tests/core/test_device_hide_variables_audit_repro.py
• tests/core/test_helper_functions_addlibrarypath_audit_repro.py
• tests/core/test_helper_functions_make_wrapper_audit_repros.py
• tests/core/test_helper_functions_yaml_safety_audit_repros.py
• tests/core/test_main_cli_audit_repro.py
• tests/core/test_min_python_audit_repro.py
• tests/cpp/memory/CMakeLists.txt
• tests/cpp/memory/test_block_alloc_failure_audit_repro.cpp
• tests/cpp/memory/test_block_numeric_edge_cases_audit_repro.cpp
• tests/cpp/memory/test_block_setbytes_byte_reverse_audit_repro.cpp
• tests/cpp/memory/test_block_vla_audit_repro.cpp
• tests/cpp/memory/test_emulate_null_alloc_audit_repro.cpp
• tests/cpp/memory/test_variable_alloc_failure_audit_repro.cpp

Verification

• Lint: ./scripts/run_linters.sh
• C++ tests: cmake -DROGUE_BUILD_TESTS=ON -B build && cmake --build build && ctest --test-dir build
• Python tests: pytest tests/

[ruck314]

Closing — diff still too large for one-pass review. Replacement slices being created and will be linked here.

[ruck314]

Replaced by:

• fix(protocols): SRP, UDP, batcher, xilinx audit fixes + repros #1205 → fix(srp): harden SrpV0 and SrpV3Emulation with RAII, error handling, and docs #1212 (srp), fix(udp): RAII thread ownership, FD_SETSIZE guards, and safe stop() #1213 (udp), fix(batcher): InverterV1, InverterV2 bounds-check audit fixes + repros #1214 (batcher), fix(xilinx): harden XVC bridge fd bounds checking and JtagDriver error logging #1215 (xilinx)
• fix(core): Helpers, Logging, Queue, Pool, Version audit fixes + repros #1208 → fix(helpers): emit deprecation warning from rogueStreamTap macro #1216 (helpers), fix(logging): filter leak, lock guard, va_end pairing audit fixes + repros #1217 (logging), fix(queue): thread-safety hardening for Queue<T> (empty/setMax/setThold) #1218 (queue), fix(version): Version::init() race fix #1219 (version), fix(pool): document new[]/delete[] contract on Pool::createBuffer() #1220 (pool), fix(perf): make perf test imports work as both module and standalone script #1221 (perf-tests)
• fix(pyrogue): core PyRogue (_*.py) and memory layer audit fixes + repros #1211 → fix(pyrogue,memory): _Block.py + Block/Emulate/Variable hardening #1222 (pyrogue-block-memory), fix(pyrogue): _Variable.py, _Device.py, _DataReceiver.py audit fixes + repros #1223 (pyrogue-variable-device), fix(pyrogue): _Node.py, _Root.py, _PollQueue.py audit fixes + repros #1224 (pyrogue-node-root-pollqueue), fix(pyrogue): harden YAML loader, tighten helpers and CLI #1225 (pyrogue-helpers-init-cli)