Disable warnings for createsubdb in clusterupdate

Author: milot-mirdita

data/workflow/update_clustering.sh

@@ -96,7 +96,7 @@ if [ -s "${TMP_PATH}/removedSeqs" ]; then
     else
         if notExists "${TMP_PATH}/REMOVEDMEMBERS.dbtype"; then
             # shellcheck disable=SC2086
-            "$MMSEQS" createsubdb "${TMP_PATH}/removedSeqs" "${OLDCLUST}" "${TMP_PATH}/REMOVEDMEMBERS" --subdb-mode 0 ${VERBOSITY} \
+            "$MMSEQS" createsubdb "${TMP_PATH}/removedSeqs" "${OLDCLUST}" "${TMP_PATH}/REMOVEDMEMBERS" --subdb-mode 0 ${NOWARNINGS_PAR} \
                 || fail "createsubdb died"
         fi
 
@@ -115,7 +115,7 @@ if [ -s "${TMP_PATH}/removedSeqs" ]; then
 
         if notExists "${TMP_PATH}/OLCLUST.withoutDeletedKeys.dbtype"; then
             # shellcheck disable=SC2086
-            "$MMSEQS" createsubdb "${TMP_PATH}/mappingSeqs" "${OLDCLUST}" "${TMP_PATH}/OLCLUST.withoutDeletedKeys" --subdb-mode 1 ${VERBOSITY} \
+            "$MMSEQS" createsubdb "${TMP_PATH}/mappingSeqs" "${OLDCLUST}" "${TMP_PATH}/OLCLUST.withoutDeletedKeys" --subdb-mode 1 ${NOWARNINGS_PAR} \
                 || fail "createsubdb died"
         fi
 

src/workflow/ClusterUpdate.cpp

@@ -56,6 +56,12 @@ int clusterupdate(int argc, const char **argv, const Command& command) {
     cmd.addVariable("RUNNER", par.runner.c_str());
     cmd.addVariable("DIFF_PAR", par.createParameterString(par.diff).c_str());
     cmd.addVariable("VERBOSITY", par.createParameterString(par.onlyverbosity).c_str());
+
+    int oldVerbosity = par.verbosity;
+    par.verbosity = std::min(par.verbosity, 1);
+    cmd.addVariable("NOWARNINGS_PAR", par.createParameterString(par.onlyverbosity).c_str());
+    par.verbosity = oldVerbosity;
+
     cmd.addVariable("THREADS_PAR", par.createParameterString(par.onlythreads).c_str());
     cmd.addVariable("RESULT2REPSEQ_PAR", par.createParameterString(par.result2repseq).c_str());