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Hello,
When using easy-linclust
with a fasta file containing sequences over multiple lines, there is a confusing warning message
[Multiline fasta can not be combined with --createdb-mode 0
We recompute with --createdb-mode 1
This is a similar issue to this one #955.
By default easy-linclust
is run with --createdb-mode 1
which uses the SEQUENCE_SPLIT_MODE_SOFT = 1
parameter. I believe the messages should be reversed here. We can't run with --createdb-mode 1
so we change to --createdb-mode 0 (SEQUENCE_SPLIT_MODE_HARD = 0)
My understanding is that the hard mode is the one changing the input fasta to the desired format.
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