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Have all amino acids in MSA #964

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caofan opened this issue Feb 28, 2025 · 0 comments
Open

Have all amino acids in MSA #964

caofan opened this issue Feb 28, 2025 · 0 comments

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@caofan
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caofan commented Feb 28, 2025

After generating the clusters using mmseqs linclust, some of the member sequences may have amino acids in lower cases, and are removed from MSA outputs. Is there a way to keep every amino acid and just add gaps to other sequences in the MSA?

Thanks.
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