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Move to 1-indexing for PDB/CIFs

Status: Open.

#84 In softnanolab/bagel;

· jakublala opened on Aug 22, 2025

Implement ipSAE Energy Term

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#82 In softnanolab/bagel;

· jakublala opened on Aug 15, 2025

Async/parallel execution of multiple oracles and states

Status: Open.

#81 In softnanolab/bagel;

· jakublala opened on Aug 14, 2025

Option to average out System's energy with multiple States

Status: Open.

#80 In softnanolab/bagel;

· jakublala opened on Aug 14, 2025

Implement hybrid sampler

Status: Open.

#79 In softnanolab/bagel;

· sangioletti opened on Aug 13, 2025

Wrapper around any EnergyTerm

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#78 In softnanolab/bagel;

· jakublala opened on Aug 12, 2025

Do we need python=3.12?

Status: Open.

#72 In softnanolab/bagel;

· jakublala opened on Jul 7, 2025

Make sure permissions on github repo are sorted

Status: Open.

#63 In softnanolab/bagel;

· jakublala opened on Jul 3, 2025

Support for two energy terms of the same type per State

Status: Open.

#58 In softnanolab/bagel;

· jakublala opened on Jun 30, 2025

Add all one-to-one exact templates from the paper to the repo

Status: Open.

#54 In softnanolab/bagel;

· jakublala opened on Jun 10, 2025

Add citation bibtex to bagel and boileroom once paper is out

Status: Open.

#52 In softnanolab/bagel;

· jakublala opened on Jun 10, 2025

FASTA files logging in wrong folder

Status: Open.

#51 In softnanolab/bagel;

· sangioletti opened on Jun 9, 2025