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Refactor to enable multiple backends

Status: Open.

#37 In softnanolab/boileroom;

· jakublala opened on Sep 24, 2025

Make a note of how the cache works and how to delete it

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#36 In softnanolab/boileroom;

· jakublala opened on Sep 24, 2025

Remove <code>RESIDUE_ATOMS</code> as it is incorrect

Status: Open.

#33 In softnanolab/boileroom;

· jakublala opened on Sep 9, 2025

Add ISM as a drop-in replacement for ESM2

Status: Open.

#32 In softnanolab/boileroom;

· jakublala opened on Aug 26, 2025

Move back to 1-indexing

Status: Open.

#31 In softnanolab/boileroom;

· jakublala opened on Aug 22, 2025

Deep dive and Implement faster PLMs

Status: Open.

#22 In softnanolab/boileroom;

· jakublala opened on Jun 15, 2025

Implement dependency-less <code>to_pdb</code> and <code>to_cif</code> functions

Status: Open.

#20 In softnanolab/boileroom;

· jakublala opened on Jun 2, 2025

Turn Modal container instructions into a Dockerfile (for ESMFold)

Status: Open.

#19 In softnanolab/boileroom;

· jakublala opened on Jun 2, 2025

First attempt at Apptainer engine running ESMFold

Status: Open.

#18 In softnanolab/boileroom;

· jakublala opened on Jun 2, 2025

De-risk idea by using Docker SDK to run ESMFold locally

Status: Open.

#17 In softnanolab/boileroom;

· jakublala opened on Jun 2, 2025

ESMFold: Positional Encoding

Status: Open.

#16 In softnanolab/boileroom;

· jakublala opened on Jun 2, 2025

Add proper types to next modalfold version

Status: Open.

#15 In softnanolab/boileroom;

· jakublala opened on Jun 2, 2025