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…ne species not in species tree.
… returns undefined value.
reroots the copy with urec, ...
by giving a node and a distance above it. If the node is already the root, then now it skips rerooting. 2) In find_mindl_node, decircularize $gene_tree_copy to avoid mem leak.
not in species tree (in find_mindl_node).
including getting bootstrap resampled overlaps.
…node deletion to prune_leaves
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Improvements to ortholog prediction when gene tree
has leaves with species not in species tree.