This repository contains material from the Botany 2025 workshop titled 'Using Digitized Collections-Based Data in Research: Applications for Ecology, Phylogenetics, and Biogeography' which was held in July 2025.
HTML version of our R markdown can also be viewed here: https://soltislab.github.io/BotanyENMWorkshops/Botany2025/Botany2025.html
Pam Soltis, Doug Soltis, Shelly Gaynor, Makenzie Mabry, Elizabeth White, JT Miller, Sarah Ellen Strickland, Sebastian Fernandez, Sydney Barfus, and Tyler Radtke.
Many people contributed to this material including Anthony Melton, Johanna Jantzen, Andre Naranjo, Maria Cortez, Malu Ore Rengifo, Lauren Gillett, and more.
The data for this workshop has been moved to Zenodo. Please download the data folder from Zenodo: doi.org/10.5281/zenodo.16755492
Once you clone this repository, place the folder from Zenodo in 'Botany2025/'. You must unzip the data folder to run through the workshop scripts.
iDigBio API Working Group
QGIS Introduction - RhettRautsaw/GIS_Tutorial
SDM Best Practices
mbelitz/Odo_SDM_Rproj
mgaynor1/CURE-FL-Plants
mgaynor1/R4NaturalHistoryCollections-BCEENET2021
mgaynor1/long-winded-scripts
mgaynor1/BLUE-Intro2RwithBiodiversityData
mgaynor1/BCEENET-DataCleaning
aemelton/EA_ENA_ENM
ryanafolk/pno_calc
ryanafolk/ambitus
ryanafolk/eco-discretizer
richiehodel/Amborella_ENM
jjantzen/CommPhylogeneticsOSBS