Update some augmentations to work with new version of numpy#442

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MarieRoald wants to merge 5 commits intosparkfish:devfrom

MarieRoald:fix-ink-generator

Commits on Sep 10, 2024

Update inkgenerator to work with new version of numpy
MarieRoald
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Commits on Sep 23, 2024

Commits on Sep 25, 2024

Revert astype(int) -> item()
MarieRoald
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