Bump the all-minor-and-patch-dependency-updates group with 9 updates (#111)

---
updated-dependencies:
- dependency-name: bandit
  dependency-version: 1.8.5
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-minor-and-patch-dependency-updates
- dependency-name: pytest
  dependency-version: 8.4.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-minor-and-patch-dependency-updates
- dependency-name: pytest-cov
  dependency-version: 6.2.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-minor-and-patch-dependency-updates
- dependency-name: ruff
  dependency-version: 0.12.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-minor-and-patch-dependency-updates
- dependency-name: pandas
  dependency-version: 2.3.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-minor-and-patch-dependency-updates
- dependency-name: ray[default]
  dependency-version: 2.47.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-minor-and-patch-dependency-updates
- dependency-name: torch
  dependency-version: 2.7.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-minor-and-patch-dependency-updates
- dependency-name: tox
  dependency-version: 4.27.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: all-minor-and-patch-dependency-updates
- dependency-name: sphinx-automodapi
  dependency-version: 0.20.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-minor-and-patch-dependency-updates
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Author: dependabot[bot]

requirements/build.txt

@@ -1,5 +1,5 @@
-bandit==1.8.3
+bandit==1.8.5
 build==1.2.2.post1
-pytest==8.3.5
-pytest-cov==6.1.1
-ruff==0.11.12
+pytest==8.4.1
+pytest-cov==6.2.1
+ruff==0.12.1

requirements/dev.txt

@@ -1 +1 @@
-tox==4.26.0
+tox==4.27.0

requirements/docs.txt

@@ -3,5 +3,5 @@
 sphinx==8.2.3
 sphinx_rtd_theme==3.0.2
 sphinx_book_theme==1.1.4
-sphinx-automodapi==0.19.0
+sphinx-automodapi==0.20.0
 sphinx-issues==5.0.1

requirements/prd.txt

@@ -1,7 +1,7 @@
 ase==3.25.0
 dplutils>=0.8.0
-pandas==2.2.3
-ray[default]==2.46.0
+pandas==2.3.0
+ray[default]==2.47.1
 rdkit_pypi==2022.9.5
-torch==2.7.0
+torch==2.7.1
 torch_geometric==2.6.1

requirements/test.txt

@@ -1,4 +1,4 @@
-pytest==8.3.5
-pytest-cov==6.1.1
-bandit==1.8.3
-ruff==0.11.12
+pytest==8.4.1
+pytest-cov==6.2.1
+bandit==1.8.5
+ruff==0.12.1