Bump the all-minor-and-patch-dependency-updates group across 1 directory with 9 updates

Bumps the all-minor-and-patch-dependency-updates group with 9 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [pytest-cov](https://github.com/pytest-dev/pytest-cov) | `6.1.0` | `6.1.1` |
| [ruff](https://github.com/astral-sh/ruff) | `0.11.2` | `0.11.10` |
| [ase](https://gitlab.com/ase/ase) | `3.24.0` | `3.25.0` |
| [ray[default]](https://github.com/ray-project/ray) | `2.44.1` | `2.46.0` |
| [torch](https://github.com/pytorch/pytorch) | `2.6.0` | `2.7.0` |
| [tox](https://github.com/tox-dev/tox) | `4.25.0` | `4.26.0` |
| [sphinx](https://github.com/sphinx-doc/sphinx) | `8.1.3` | `8.2.3` |
| [sphinx-automodapi](https://github.com/astropy/sphinx-automodapi) | `0.18.0` | `0.19.0` |
| [sphinx-issues](https://github.com/sloria/sphinx-issues) | `5.0.0` | `5.0.1` |



Updates `pytest-cov` from 6.1.0 to 6.1.1
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](pytest-dev/pytest-cov@v6.1.0...v6.1.1)

Updates `ruff` from 0.11.2 to 0.11.10
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.11.2...0.11.10)

Updates `ase` from 3.24.0 to 3.25.0
- [Changelog](https://gitlab.com/ase/ase/blob/master/CHANGELOG.rst)
- [Commits](https://gitlab.com/ase/ase/compare/3.24.0...3.25.0)

Updates `ray[default]` from 2.44.1 to 2.46.0
- [Release notes](https://github.com/ray-project/ray/releases)
- [Commits](ray-project/ray@ray-2.44.1...ray-2.46.0)

Updates `torch` from 2.6.0 to 2.7.0
- [Release notes](https://github.com/pytorch/pytorch/releases)
- [Changelog](https://github.com/pytorch/pytorch/blob/main/RELEASE.md)
- [Commits](pytorch/pytorch@v2.6.0...v2.7.0)

Updates `tox` from 4.25.0 to 4.26.0
- [Release notes](https://github.com/tox-dev/tox/releases)
- [Changelog](https://github.com/tox-dev/tox/blob/main/docs/changelog.rst)
- [Commits](tox-dev/tox@4.25.0...4.26.0)

Updates `sphinx` from 8.1.3 to 8.2.3
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES.rst)
- [Commits](sphinx-doc/sphinx@v8.1.3...v8.2.3)

Updates `sphinx-automodapi` from 0.18.0 to 0.19.0
- [Release notes](https://github.com/astropy/sphinx-automodapi/releases)
- [Changelog](https://github.com/astropy/sphinx-automodapi/blob/main/CHANGES.rst)
- [Commits](astropy/sphinx-automodapi@v0.18.0...v0.19.0)

Updates `sphinx-issues` from 5.0.0 to 5.0.1
- [Commits](sloria/sphinx-issues@5.0.0...5.0.1)

---
updated-dependencies:
- dependency-name: pytest-cov
  dependency-version: 6.1.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-minor-and-patch-dependency-updates
- dependency-name: ruff
  dependency-version: 0.11.10
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-minor-and-patch-dependency-updates
- dependency-name: ase
  dependency-version: 3.25.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-minor-and-patch-dependency-updates
- dependency-name: ray[default]
  dependency-version: 2.46.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-minor-and-patch-dependency-updates
- dependency-name: torch
  dependency-version: 2.7.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-minor-and-patch-dependency-updates
- dependency-name: tox
  dependency-version: 4.26.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: all-minor-and-patch-dependency-updates
- dependency-name: sphinx
  dependency-version: 8.2.3
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-minor-and-patch-dependency-updates
- dependency-name: sphinx-automodapi
  dependency-version: 0.19.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-minor-and-patch-dependency-updates
- dependency-name: sphinx-issues
  dependency-version: 5.0.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-minor-and-patch-dependency-updates
...

Signed-off-by: dependabot[bot] <support@github.com>

Author: dependabot[bot]

requirements/build.txt

@@ -1,5 +1,5 @@
 bandit==1.8.3
 build==1.2.2.post1
 pytest==8.3.5
-pytest-cov==6.1.0
-ruff==0.11.2
+pytest-cov==6.1.1
+ruff==0.11.12

requirements/dev.txt

@@ -1 +1 @@
-tox==4.25.0
+tox==4.26.0

requirements/docs.txt

@@ -1,7 +1,7 @@
 -r dev.txt
 
-sphinx==8.1.3
+sphinx==8.2.3
 sphinx_rtd_theme==3.0.2
 sphinx_book_theme==1.1.4
-sphinx-automodapi==0.18.0
-sphinx-issues==5.0.0
+sphinx-automodapi==0.19.0
+sphinx-issues==5.0.1

requirements/prd.txt

@@ -1,7 +1,7 @@
-ase==3.24.0
+ase==3.25.0
 dplutils>=0.8.0
 pandas==2.2.3
-ray[default]==2.44.1
+ray[default]==2.46.0
 rdkit_pypi==2022.9.5
-torch==2.6.0
+torch==2.7.0
 torch_geometric==2.6.1

requirements/test.txt

@@ -1,4 +1,4 @@
 pytest==8.3.5
-pytest-cov==6.1.0
+pytest-cov==6.1.1
 bandit==1.8.3
-ruff==0.11.2
+ruff==0.11.12