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Delivery of a GitHub repository containing a fully documented python framework for training a deep neural network to skeletonize neural dendrites.
Overdue by 2 month(s)•Due by June 30, 2025•2/2 issues closedDelivery of a GitHub repository containing a fully documented python framework for training a deep neural network to skeletonize neural dendrites
No due dateCreation of a post-processing method to reconnect sub-dendrites that by assumption were “broken” in the inference process.
No due date•4/4 issues closedCreation of a production model, trained on 3334^2 pixel images with (a) image tiling and inference on individual tiles, (b) evaluation of tiles-to-image reconstruction methods on analysis results.
No due date•3/3 issues closedCreation of a statistical framework to compare results, in python
No due date•3/3 issues closed3. Creation of a PoC model trained on synthetic 1024^2 images 1. no tiling 2. 5 noise levels 3. statistical comparison to PIs results
No due date•2/2 issues closedThe PI team’s Matlab code analysis results will represent the state-of-the-art analysis for the purposes of this project.
No due date•2/2 issues closedDelivery to SSEC of simulated image-skeleton training image pairs in pixel sizes 1024^2 and 3334^2.
No due date•1/1 issues closed