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feat: add `stats/strided/scovarmtk`
gururaj1512 8f00eb4
docs: fix return value
kgryte 10d8126
docs: fix return value
kgryte 180063b
docs: fix return value
kgryte ed94019
docs: fix description
kgryte 8d94ee0
fix: ensure accumulation happens in single-precision
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lib/node_modules/@stdlib/stats/strided/scovarmtk/README.md
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<!-- | ||
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@license Apache-2.0 | ||
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Copyright (c) 2025 The Stdlib Authors. | ||
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Licensed under the Apache License, Version 2.0 (the "License"); | ||
you may not use this file except in compliance with the License. | ||
You may obtain a copy of the License at | ||
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http://www.apache.org/licenses/LICENSE-2.0 | ||
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Unless required by applicable law or agreed to in writing, software | ||
distributed under the License is distributed on an "AS IS" BASIS, | ||
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
See the License for the specific language governing permissions and | ||
limitations under the License. | ||
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--> | ||
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<!-- lint disable maximum-heading-length --> | ||
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# scovarmtk | ||
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> Calculate the [covariance][covariance] of two single-precision floating-point strided arrays provided known means and using a one-pass textbook algorithm. | ||
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<section class="intro"> | ||
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The population [covariance][covariance] of two finite size populations of size `N` is given by | ||
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<!-- <equation class="equation" label="eq:population_covariance" align="center" raw="\operatorname{\mathrm{cov_N}} = \frac{1}{N} \sum_{i=0}^{N-1} (x_i - \mu_x)(y_i - \mu_y)" alt="Equation for the population covariance."> --> | ||
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```math | ||
\mathop{\mathrm{cov_N}} = \frac{1}{N} \sum_{i=0}^{N-1} (x_i - \mu_x)(y_i - \mu_y) | ||
``` | ||
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<!-- </equation> --> | ||
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where the population means are given by | ||
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<!-- <equation class="equation" label="eq:population_mean_for_x" align="center" raw="\mu_x = \frac{1}{N} \sum_{i=0}^{N-1} x_i" alt="Equation for the population mean for first array."> --> | ||
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```math | ||
\mu_x = \frac{1}{N} \sum_{i=0}^{N-1} x_i | ||
``` | ||
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<!-- </equation> --> | ||
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and | ||
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<!-- <equation class="equation" label="eq:population_mean_for_y" align="center" raw="\mu_y = \frac{1}{N} \sum_{i=0}^{N-1} y_i" alt="Equation for the population mean for second array."> --> | ||
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```math | ||
\mu_y = \frac{1}{N} \sum_{i=0}^{N-1} y_i | ||
``` | ||
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<!-- </equation> --> | ||
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Often in the analysis of data, the true population [covariance][covariance] is not known _a priori_ and must be estimated from samples drawn from population distributions. If one attempts to use the formula for the population [covariance][covariance], the result is biased and yields a **biased sample covariance**. To compute an **unbiased sample covariance** for samples of size `n`, | ||
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<!-- <equation class="equation" label="eq:unbiased_sample_covariance" align="center" raw="\operatorname{\mathrm{cov_n}} = \frac{1}{n-1} \sum_{i=0}^{n-1} (x_i - \bar{x}_n)(y_i - \bar{y}_n)" alt="Equation for computing an unbiased sample variance."> --> | ||
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```math | ||
\mathop{\mathrm{cov_n}} = \frac{1}{n-1} \sum_{i=0}^{n-1} (x_i - \bar{x}_n)(y_i - \bar{y}_n) | ||
``` | ||
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<!-- </equation> --> | ||
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where sample means are given by | ||
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<!-- <equation class="equation" label="eq:sample_mean_for_x" align="center" raw="\bar{x} = \frac{1}{n} \sum_{i=0}^{n-1} x_i" alt="Equation for the sample mean for first array."> --> | ||
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```math | ||
\bar{x} = \frac{1}{n} \sum_{i=0}^{n-1} x_i | ||
``` | ||
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<!-- </equation> --> | ||
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and | ||
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<!-- <equation class="equation" label="eq:sample_mean_for_y" align="center" raw="\bar{y} = \frac{1}{n} \sum_{i=0}^{n-1} y_i" alt="Equation for the sample mean for second array."> --> | ||
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```math | ||
\bar{y} = \frac{1}{n} \sum_{i=0}^{n-1} y_i | ||
``` | ||
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<!-- </equation> --> | ||
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The use of the term `n-1` is commonly referred to as Bessel's correction. Depending on the characteristics of the population distributions, other correction factors (e.g., `n-1.5`, `n+1`, etc) can yield better estimators. | ||
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</section> | ||
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<!-- /.intro --> | ||
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<section class="usage"> | ||
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## Usage | ||
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```javascript | ||
var scovarmtk = require( '@stdlib/stats/strided/scovarmtk' ); | ||
``` | ||
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#### scovarmtk( N, correction, meanx, x, strideX, meany, y, strideY ) | ||
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Computes the [covariance][covariance] of two single-precision floating-point strided arrays provided known means and using a one-pass textbook algorithm. | ||
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```javascript | ||
var Float32Array = require( '@stdlib/array/float32' ); | ||
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var x = new Float32Array( [ 1.0, -2.0, 2.0 ] ); | ||
var y = new Float32Array( [ 2.0, -2.0, 1.0 ] ); | ||
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var v = scovarmtk( x.length, 1, 1.0/3.0, x, 1, 1.0/3.0, y, 1 ); | ||
// returns ~3.8333 | ||
``` | ||
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The function has the following parameters: | ||
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- **N**: number of indexed elements. | ||
- **correction**: degrees of freedom adjustment. Setting this parameter to a value other than `0` has the effect of adjusting the divisor during the calculation of the [covariance][covariance] according to `N-c` where `c` corresponds to the provided degrees of freedom adjustment. When computing the population [covariance][covariance], setting this parameter to `0` is the standard choice (i.e., the provided arrays contain data constituting entire populations). When computing the unbiased sample [covariance][covariance], setting this parameter to `1` is the standard choice (i.e., the provided arrays contain data sampled from larger populations; this is commonly referred to as Bessel's correction). | ||
- **meanx**: mean of `x`. | ||
- **x**: first input [`Float32Array`][@stdlib/array/float32]. | ||
- **strideX**: stride length for `x`. | ||
- **meany**: mean of `y`. | ||
- **y**: second input [`Float32Array`][@stdlib/array/float32]. | ||
- **strideY**: stride length for `y`. | ||
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The `N` and stride parameters determine which elements in the strided arrays are accessed at runtime. For example, to compute the [covariance][covariance] of every other element in `x` and `y`, | ||
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```javascript | ||
var Float32Array = require( '@stdlib/array/float32' ); | ||
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var x = new Float32Array( [ 1.0, 2.0, 2.0, -7.0, -2.0, 3.0, 4.0, 2.0 ] ); | ||
var y = new Float32Array( [ 2.0, 1.0, 2.0, 1.0, -2.0, 2.0, 3.0, 4.0 ] ); | ||
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var v = scovarmtk( 4, 1, 1.25, x, 2, 1.25, y, 2 ); | ||
// returns 6.0 | ||
``` | ||
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Note that indexing is relative to the first index. To introduce an offset, use [`typed array`][mdn-typed-array] views. | ||
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<!-- eslint-disable stdlib/capitalized-comments --> | ||
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```javascript | ||
var Float32Array = require( '@stdlib/array/float32' ); | ||
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var x0 = new Float32Array( [ 2.0, 1.0, 2.0, -2.0, -2.0, 2.0, 3.0, 4.0 ] ); | ||
var y0 = new Float32Array( [ 2.0, -2.0, 2.0, 1.0, -2.0, 4.0, 3.0, 2.0 ] ); | ||
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var x1 = new Float32Array( x0.buffer, x0.BYTES_PER_ELEMENT*1 ); // start at 2nd element | ||
var y1 = new Float32Array( y0.buffer, y0.BYTES_PER_ELEMENT*1 ); // start at 2nd element | ||
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var v = scovarmtk( 4, 1, 1.25, x1, 2, 1.25, y1, 2 ); | ||
// returns ~1.9167 | ||
``` | ||
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#### scovarmtk.ndarray( N, correction, meanx, x, strideX, offsetX, meany, y, strideY, offsetY ) | ||
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Computes the [covariance][covariance] of two single-precision floating-point strided arrays provided known means and using a one-pass textbook algorithm and alternative indexing semantics. | ||
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```javascript | ||
var Float32Array = require( '@stdlib/array/float32' ); | ||
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var x = new Float32Array( [ 1.0, -2.0, 2.0 ] ); | ||
var y = new Float32Array( [ 2.0, -2.0, 1.0 ] ); | ||
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var v = scovarmtk.ndarray( x.length, 1, 1.0/3.0, x, 1, 0, 1.0/3.0, y, 1, 0 ); | ||
// returns ~3.8333 | ||
``` | ||
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The function has the following additional parameters: | ||
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- **offsetX**: starting index for `x`. | ||
- **offsetY**: starting index for `y`. | ||
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While [`typed array`][mdn-typed-array] views mandate a view offset based on the underlying buffer, the offset parameters support indexing semantics based on starting indices. For example, to calculate the [covariance][covariance] for every other element in `x` and `y` starting from the second element | ||
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```javascript | ||
var Float32Array = require( '@stdlib/array/float32' ); | ||
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var x = new Float32Array( [ 2.0, 1.0, 2.0, -2.0, -2.0, 2.0, 3.0, 4.0 ] ); | ||
var y = new Float32Array( [ -7.0, 2.0, 2.0, 1.0, -2.0, 2.0, 3.0, 4.0 ] ); | ||
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var v = scovarmtk.ndarray( 4, 1, 1.25, x, 2, 1, 1.25, y, 2, 1 ); | ||
// returns 6.0 | ||
``` | ||
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</section> | ||
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<!-- /.usage --> | ||
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<section class="notes"> | ||
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## Notes | ||
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- If `N <= 0`, both functions return `NaN`. | ||
- If `N - c` is less than or equal to `0` (where `c` corresponds to the provided degrees of freedom adjustment), both functions return `NaN`. | ||
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</section> | ||
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<!-- /.notes --> | ||
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<section class="examples"> | ||
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## Examples | ||
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<!-- eslint no-undef: "error" --> | ||
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```javascript | ||
var discreteUniform = require( '@stdlib/random/array/discrete-uniform' ); | ||
var scovarmtk = require( '@stdlib/stats/strided/scovarmtk' ); | ||
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var opts = { | ||
'dtype': 'float32' | ||
}; | ||
var x = discreteUniform( 10, -50, 50, opts ); | ||
console.log( x ); | ||
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var y = discreteUniform( 10, -50, 50, opts ); | ||
console.log( y ); | ||
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var v = scovarmtk( x.length, 1, 0.0, x, 1, 0.0, y, 1 ); | ||
console.log( v ); | ||
``` | ||
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</section> | ||
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<!-- /.examples --> | ||
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<!-- C interface documentation. --> | ||
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* * * | ||
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<section class="c"> | ||
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## C APIs | ||
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<!-- Section to include introductory text. Make sure to keep an empty line after the intro `section` element and another before the `/section` close. --> | ||
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<section class="intro"> | ||
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</section> | ||
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<!-- /.intro --> | ||
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<!-- C usage documentation. --> | ||
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<section class="usage"> | ||
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### Usage | ||
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```c | ||
#include "stdlib/stats/strided/scovarmtk.h" | ||
``` | ||
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#### stdlib_strided_scovarmtk( N, correction, meanx, \*X, strideX, meany, \*Y, strideY ) | ||
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Computes the [covariance][covariance] of two single-precision floating-point strided arrays provided known means and using a one-pass textbook algorithm. | ||
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```c | ||
const float x[] = { 1.0f, -2.0f, 2.0f }; | ||
const float y[] = { 2.0f, -2.0f, 1.0f }; | ||
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float v = stdlib_strided_scovarmtk( 3, 1.0f, 1.0f/3.0f, x, 1, 1.0f/3.0f, y, 1 ); | ||
// returns ~7.6667f | ||
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``` | ||
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The function accepts the following arguments: | ||
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- **N**: `[in] CBLAS_INT` number of indexed elements. | ||
- **correction**: `[in] float` degrees of freedom adjustment. Setting this parameter to a value other than `0` has the effect of adjusting the divisor during the calculation of the [covariance][covariance] according to `N-c` where `c` corresponds to the provided degrees of freedom adjustment. When computing the population [covariance][covariance], setting this parameter to `0` is the standard choice (i.e., the provided arrays contain data constituting entire populations). When computing the unbiased sample [covariance][covariance], setting this parameter to `1` is the standard choice (i.e., the provided arrays contain data sampled from larger populations; this is commonly referred to as Bessel's correction). | ||
- **meanx**: `[in] float` mean of `X`. | ||
- **X**: `[in] float*` first input array. | ||
- **strideX**: `[in] CBLAS_INT` stride length for `X`. | ||
- **meany**: `[in] float` mean of `Y`. | ||
- **Y**: `[in] float*` second input array. | ||
- **strideY**: `[in] CBLAS_INT` stride length for `Y`. | ||
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```c | ||
float stdlib_strided_scovarmtk( const CBLAS_INT N, const float correction, const float meanx, const float *X, const CBLAS_INT strideX, const float meany, const float *Y, const CBLAS_INT strideY ); | ||
``` | ||
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#### stdlib_strided_scovarmtk_ndarray( N, correction, meanx, \*X, strideX, offsetX, meany, \*Y, strideY, offsetY ) | ||
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Computes the [covariance][covariance] of two single-precision floating-point strided arrays provided known means and using a one-pass textbook algorithm and alternative indexing semantics. | ||
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```c | ||
const float x[] = { 1.0f, -2.0f, 2.0f }; | ||
const float y[] = { 2.0f, -2.0f, 1.0f }; | ||
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float v = stdlib_strided_scovarmtk_ndarray( 3, 1.0f, 1.0f/3.0f, x, 1, 0, 1.0f/3.0f, y, 1, 0 ); | ||
// returns ~7.6667f | ||
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``` | ||
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The function accepts the following arguments: | ||
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- **N**: `[in] CBLAS_INT` number of indexed elements. | ||
- **correction**: `[in] float` degrees of freedom adjustment. Setting this parameter to a value other than `0` has the effect of adjusting the divisor during the calculation of the [covariance][covariance] according to `N-c` where `c` corresponds to the provided degrees of freedom adjustment. When computing the population [covariance][covariance], setting this parameter to `0` is the standard choice (i.e., the provided arrays contain data constituting entire populations). When computing the unbiased sample [covariance][covariance], setting this parameter to `1` is the standard choice (i.e., the provided arrays contain data sampled from larger populations; this is commonly referred to as Bessel's correction). | ||
- **meanx**: `[in] float` mean of `X`. | ||
- **X**: `[in] float*` first input array. | ||
- **strideX**: `[in] CBLAS_INT` stride length for `X`. | ||
- **offsetX**: `[in] CBLAS_INT` starting index for `X`. | ||
- **meany**: `[in] float` mean of `Y`. | ||
- **Y**: `[in] float*` second input array. | ||
- **strideY**: `[in] CBLAS_INT` stride length for `Y`. | ||
- **offsetY**: `[in] CBLAS_INT` starting index for `Y`. | ||
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```c | ||
float stdlib_strided_scovarmtk_ndarray( const CBLAS_INT N, const float correction, const float meanx, const float *X, const CBLAS_INT strideX, const CBLAS_INT offsetX, const float meany, const float *Y, const CBLAS_INT strideY, const CBLAS_INT offsetY ); | ||
``` | ||
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</section> | ||
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<!-- /.usage --> | ||
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<!-- C API usage notes. Make sure to keep an empty line after the `section` element and another before the `/section` close. --> | ||
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<section class="notes"> | ||
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</section> | ||
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<!-- /.notes --> | ||
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<!-- C API usage examples. --> | ||
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<section class="examples"> | ||
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### Examples | ||
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```c | ||
#include "stdlib/stats/strided/scovarmtk.h" | ||
#include <stdio.h> | ||
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int main( void ) { | ||
// Create a strided array: | ||
const float x[] = { 1.0f, 2.0f, 3.0f, 4.0f, 5.0f, 6.0f, 7.0f, 8.0f }; | ||
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// Specify the number of elements: | ||
const int N = 4; | ||
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// Specify the stride length: | ||
const int strideX = 2; | ||
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// Compute the covariance of `x` with itself: | ||
float v = stdlib_strided_scovarmtk( N, 1.0f, 4.5f, x, strideX, 4.5f, x, -strideX ); | ||
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// Print the result: | ||
printf( "covariance: %f\n", v ); | ||
} | ||
``` | ||
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</section> | ||
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<!-- /.examples --> | ||
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</section> | ||
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<!-- /.c --> | ||
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<section class="references"> | ||
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</section> | ||
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<!-- /.references --> | ||
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<!-- Section for related `stdlib` packages. Do not manually edit this section, as it is automatically populated. --> | ||
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<section class="related"> | ||
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</section> | ||
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<!-- /.related --> | ||
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<!-- Section for all links. Make sure to keep an empty line after the `section` element and another before the `/section` close. --> | ||
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<section class="links"> | ||
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[covariance]: https://en.wikipedia.org/wiki/Covariance | ||
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[@stdlib/array/float32]: https://github.com/stdlib-js/stdlib/tree/develop/lib/node_modules/%40stdlib/array/float32 | ||
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[mdn-typed-array]: https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/TypedArray | ||
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</section> | ||
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<!-- /.links --> |
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