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1 parent 4172d63 commit b3e611eCopy full SHA for b3e611e
vignettes/introduction.Rmd
@@ -283,7 +283,7 @@ pbmc_small_UMAP %>%
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We can infer cell type identities using *SingleR* [@aran2019reference] and manipulate the output using tidyverse.
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-```{r}
+```{r eval=FALSE}
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# Get cell type reference data
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blueprint <- celldex::BlueprintEncodeData()
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@@ -298,7 +298,9 @@ cell_type_df <-
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as.data.frame() %>%
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as_tibble(rownames="cell") %>%
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select(cell, first.labels)
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+```
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+```{r}
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# Join UMAP and cell type info
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pbmc_small_cell_type <-
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pbmc_small_UMAP %>%
@@ -459,4 +461,4 @@ tidySCE::pbmc_small_nested_interactions
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sessionInfo()
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```
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-# References
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+# References
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