Mondo Disease Ontology
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Updated
Oct 21, 2025 - Jupyter Notebook
Mondo Disease Ontology
Schema and generated objects for biolink data model and upper ontology
Graph-based modeling environment for biology, including prototype editor and services
Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species
Common value sets (enums) for science, biomedicine, computing, and other areas
Copier template for adding AI integrations to a GH repo
Demonstration of AI review of existing functional annotations
A simple Python wrapper for multiple deep research tools including OpenAI Deep Research, FutureHouse Falcon, and Perplexity AI.
Python tools for programmatically manipulating GO-CAM (Gene Ontology Causal Activity Models) via the Noctua/Minerva/Barista API stack, with additional support for querying GO annotations and bioentities via GOlr
MCP server for GO-CAM model editing via the Barista API.
Simple experiment to compare ENVO similarity to google embedding cosine similarity
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