VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply provide a directory with output files and VueGen compiles them into a structured report.

Network Regression Embeddings reveal cell-type Transcription Factor coordination for target gene (TG) regulation

High-performance Julia tool for sequence demultiplexing

Python package for creating interactive and static visualizations of multi-omics data

Easy Way to Generate PSSM from the FASTA Sequences

Batch Effect Correction framework for metagenomic data

BioGenie is a complete bioinformatics command line tool, written in C++.

EDAMannot is a command-line toolbox which applies to annotations related to the EDAM ontology.

Bioinformatics Dependencies Platform - A better way to manage your bioinformatics data sources, search and query across multiple bioinformatics databases, tooling. Properly version and reproduce your research, generate citation and data acessibility statement.

DNA mutation clustering tool for fast detection of likely false-negative DNA variants and likely related mutants in a sequenced population of independently mutagenized individuals. Other uses include analysis of segregating mutants and the detection of problematic samples in a sequenced population.

Web tool for identifying and generating pathogenic protein variant sequences from canonical FASTA files, utilizing the UniProt API.

Official code repository for GATK versions 4 and up

Assessing bioinformatics software annotations: bio.tools case-study

Bioconda is a distribution of bioinformatics software realized as a channel for the versatile package manager Conda.