Repository to host tool-specific module files for the Nextflow DSL2 community!

Nextflow config builder scripts for supported HPC infrastructures.

Germline structural variant calling pipeline for short read WGS datasets

Template for creating Nextflow DSL2 pipelines

Streamlined Nextflow wrapper for the Sequenoscope toolkit. Simplifies complex metagenomic workflows with automated batch processing, allowing efficient comparative analysis from raw reads to visualization.

A Nextflow pipeline to experiment with DSL2 + Zero Mess

A straightforward Nextflow workflow template generator.

Nextflow DSL2 pipeline for PacBio HiFi variant calling. Supports minimap2 and pbmm2 alignment with bcftools, Clair3, and DeepVariant variant callers. Fully containerized with Docker. Packaged with benchmarking tools for method validation and testing.

Developmental Nextflow DSL2 components

nowayout is an ultra-fast automated software pipeline for taxonomic classification of Eukaryotic mitochondrial reads.

End-to-end RNA-seq DESeq2 Nextflow pipeline on AWS for Alzheimer's disease transcriptomics

Nextflow DSL2 pipeline for design generation, scoring, QC metrics, and HTML reporting

Step-by-step Nextflow DSL2 tutorials for bioinformatics: channels, QC, RNA-seq, variant calling, proteomics, scatter-gather, and container integration

Custom Nextflow DSL2 modules

A nextflow pipeline for Current Effective Population Size (Ne) calculations with bootstrapping

quick taxonomic assignment of Nanopore metabarding data

Example for using an external submodule in Nextflow with DSL2

Repository to host tool-specific module files for the Nextflow DSL2 community!