SeqAn's official repository.
NGLess: NGS with less work
FastQC port to Qt5: A quality control tool for high throughput sequence data.
Parse and process FASTA and FASTQ formatted files of biological sequences.
A secure encryption tool for genomic data
Ultra Fast NGS Data QC Tool
Datastores for reads, not your papa's FASTQ files.
BioC++ Input/Output library
A pipeline that can be used to recover corrupted FASTQ.gz files, drop or fix uncompliant reads, remove unpaired reads, and settles reads that became disordered
fxtools: light-weight processing tool for FASTA/FASTQ/BAM format data
FLiCK - Format LeveragIng Compression frameworK
Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/, original code from @marta- , with some work done by @yoann-dufresne)
simple and convenient program to convert fasta sequences to fastq sequences
Hadoop Sequence Parser (HSP) library
Lossless compression of FASTQ sequences.
Set of tools to deal with sequences in FastQ format
fdemux is a FASTA/FASTQ demultiplexer with support for (arbitrarily) fuzzy barcode matching, asymmetric barcoding, and parallel processing.
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