Cannot import segmentify (or run example script) if installed from PyPI #28
Description
Cannot import segmentify after installation from PyPI following the instructions in the README, but works fine from local installation. Is it just me that has this issue, or does the PyPI release need updating?
My first thought was that the release on PyPI was just an empty placeholder, but this PR suggests that it should be functional (#22). I have a conda environment with all the correct dependencies already installed. When I install segmentify from PyPI, I can't import segmentify (which means the example script doesn't run). When I uninstall the PyPI version and install segmentify locally from the master branch, the example script launches fine.
Details:
(segmentify) genevieve@MU00060583:~/Documents$ pip install segmentify
WARNING: pip is being invoked by an old script wrapper. This will fail in a future version of pip.
Please see https://github.com/pypa/pip/issues/5599 for advice on fixing the underlying issue.
To avoid this problem you can invoke Python with '-m pip' instead of running pip directly.
Processing /home/genevieve/.cache/pip/wheels/d8/a2/f4/ae0b5c77b1fe14e6a20b882550eed4d503182b5ac17e474df9/segmentify-0.0.1-py3-none-any.whl
Installing collected packages: segmentify
Successfully installed segmentify-0.0.1
(segmentify) genevieve@MU00060583:~/Documents$ conda list
# packages in environment at /home/genevieve/anaconda3/envs/segmentify:
#
# Name Version Build Channel
_libgcc_mutex 0.1 main
alabaster 0.7.12 pypi_0 pypi
babel 2.8.0 pypi_0 pypi
backcall 0.1.0 pypi_0 pypi
ca-certificates 2019.11.27 0
certifi 2019.11.28 py37_0
chardet 3.0.4 pypi_0 pypi
cycler 0.10.0 pypi_0 pypi
dask 2.9.2 pypi_0 pypi
decorator 4.4.1 pypi_0 pypi
docutils 0.16 pypi_0 pypi
freetype-py 2.1.0.post1 pypi_0 pypi
fsspec 0.6.2 pypi_0 pypi
idna 2.8 pypi_0 pypi
imageio 2.6.1 pypi_0 pypi
imagesize 1.2.0 pypi_0 pypi
ipykernel 5.1.4 pypi_0 pypi
ipython 7.11.1 pypi_0 pypi
ipython-genutils 0.2.0 pypi_0 pypi
jedi 0.16.0 pypi_0 pypi
jinja2 2.11.0 pypi_0 pypi
joblib 0.14.1 pypi_0 pypi
jupyter-client 5.3.4 pypi_0 pypi
jupyter-core 4.6.1 pypi_0 pypi
kiwisolver 1.1.0 pypi_0 pypi
ld_impl_linux-64 2.33.1 h53a641e_7
libedit 3.1.20181209 hc058e9b_0
libffi 3.2.1 hd88cf55_4
libgcc-ng 9.1.0 hdf63c60_0
libstdcxx-ng 9.1.0 hdf63c60_0
llvmlite 0.31.0 pypi_0 pypi
markupsafe 1.1.1 pypi_0 pypi
matplotlib 3.1.2 pypi_0 pypi
napari 0.2.10 pypi_0 pypi
ncurses 6.1 he6710b0_1
networkx 2.4 pypi_0 pypi
numba 0.47.0 pypi_0 pypi
numpy 1.18.1 pypi_0 pypi
numpydoc 0.9.2 pypi_0 pypi
openssl 1.1.1d h7b6447c_3
packaging 20.1 pypi_0 pypi
parso 0.6.0 pypi_0 pypi
pexpect 4.8.0 pypi_0 pypi
pickleshare 0.7.5 pypi_0 pypi
pillow 7.0.0 pypi_0 pypi
pip 20.0.2 py37_0
prompt-toolkit 3.0.3 pypi_0 pypi
ptyprocess 0.6.0 pypi_0 pypi
pygments 2.5.2 pypi_0 pypi
pyopengl 3.1.5 pypi_0 pypi
pyparsing 2.4.6 pypi_0 pypi
pyside2 5.14.0 pypi_0 pypi
python 3.7.6 h0371630_2
python-dateutil 2.8.1 pypi_0 pypi
pytz 2019.3 pypi_0 pypi
pywavelets 1.1.1 pypi_0 pypi
pyzmq 18.1.1 pypi_0 pypi
qtconsole 4.6.0 pypi_0 pypi
qtpy 1.9.0 pypi_0 pypi
readline 7.0 h7b6447c_5
requests 2.22.0 pypi_0 pypi
scikit-image 0.16.2 pypi_0 pypi
scikit-learn 0.22.1 pypi_0 pypi
segmentify 0.0.1 pypi_0 pypi
setuptools 45.1.0 py37_0
shiboken2 5.14.0 pypi_0 pypi
six 1.14.0 pypi_0 pypi
snowballstemmer 2.0.0 pypi_0 pypi
sphinx 2.3.1 pypi_0 pypi
sphinxcontrib-applehelp 1.0.1 pypi_0 pypi
sphinxcontrib-devhelp 1.0.1 pypi_0 pypi
sphinxcontrib-htmlhelp 1.0.2 pypi_0 pypi
sphinxcontrib-jsmath 1.0.1 pypi_0 pypi
sphinxcontrib-qthelp 1.0.2 pypi_0 pypi
sphinxcontrib-serializinghtml 1.1.3 pypi_0 pypi
sqlite 3.30.1 h7b6447c_0
tk 8.6.8 hbc83047_0
toolz 0.10.0 pypi_0 pypi
torch 1.4.0 pypi_0 pypi
torchvision 0.5.0 pypi_0 pypi
tornado 6.0.3 pypi_0 pypi
traitlets 4.3.3 pypi_0 pypi
urllib3 1.25.8 pypi_0 pypi
vispy 0.6.4 pypi_0 pypi
wcwidth 0.1.8 pypi_0 pypi
wheel 0.33.6 py37_0
wrapt 1.11.2 pypi_0 pypi
xz 5.2.4 h14c3975_4
zlib 1.2.11 h7b6447c_3
(segmentify) genevieve@MU00060583:~/Documents$ python
Python 3.7.6 (default, Jan 8 2020, 19:59:22)
[GCC 7.3.0] :: Anaconda, Inc. on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import segmentify
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
ModuleNotFoundError: No module named 'segmentify'
>>>
Tthen if I uninstall the PyPI version of segmentify and install it locally from the master branch:
pip uninstall segmentify
git clone git@github.com:transformify-plugins/segmentify.git
cd segmentify
pip install .
...things work fine.