dependency

[yichechang]

Dependency for package abcdcs and for snakemake workflow should be specified separately?

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Some more considerations

• some snakemake rules also use abcdcs. For these to work properly, while still also able to install abcdcs easily, maybe simplest for now will be having a big env.yaml to be installed.

[yichechang]

Related: should download cellpose models in a rule and make clear that it needs to be run where internet access is possible.

where to download models and where to store them

https://github.com/MouseLand/cellpose/blob/main/cellpose/models.py